Well, just to praise on how quick de novo sequencing can get when you can enable all 8 CPU nodes and riggin on GPGPU..
I know its a little odd to be putting it in here, but I just need somewhere I can gas this excitement..
New server came in with 8 spanking cores of Xeons and a FireGL with GPGPU patch enabled for our protein searching broadcast and it instantaneously puts the existing dual dual core Opteron to shame..
3x scaling on existing parallel search speeds and we can now properly do real time peptide matching over our fish cable interface to all our mass spectrometers..
GPGPU FTW!!...
Alright.. I'll go back to work now..