Originally Posted by
Fraz
Fan speeds can be controlled either by their input voltage, or via a PWM signal (which is the fourth pin on four-pin fan headers). PWM stands for pulse width modulation, and essentially works via "duty-cycle" - i.e. pulsing the full power on and off very rapidly. This is often more efficient and can also take the fan down to lower speeds than voltage control can, because fans have a minimum voltage required to rotate at all (e.g. maybe 4 volts, or some such).
As to your situation and your three-pin fans, it depends if your motherboard has the ability to send variable voltages to your fan headers (there might be some software that comes with your motherboard to do this). If it doesn't, then you'll have to get a hardware fan controller. If it does, then you should be able to control the fan-speed via software. Motherboards vary on this... my previous ABIT motherboard could control the voltage to all the fans, whereas my current ASUS mobo is less flexible.