Since installing Windows 7, I've been having an almost daily chkdsk on boot. Every time that chkdsk runs, there are no problems found and it's only running due to the dirty bit being set on the disk as a result of Windows thinking that the file system is corrupt (you can see an NTFS error in the Event Viewer).
I read about Avira anti-virus causing this problem but I'm using Microsoft Security Essentials (although there is also talk about it being a Windows 7 problem that is simply exposed by Avira). Sure enough, I disabled MSE last weekend and the problem has not re-occurred since. I was concerned about a disk or controller issue, so I'm happy that it's not that, and it doesn't actually seem to be genuine file system corruption at all (I even did a full chkdsk check), but is anybody else seeing this with MSE on Windows 7?